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Breakthroughs in Tissue Engineering
A tissue is an aggregate of cells, growing and thriving in an environment where they adhere and interact with one another. Tissue Engineering is the use of bioengineering methods to create, improve, develop and grow tissues, which then may be used for grafting, cartilage repair or, ultimately, regenerative medical procedures. The study of tissues is aimed at determining the answers to fundamental questions such as how cells react and interact in a specific matrix, and may involve the use of proteomics to study gene expression and protein production in complex environments. This form of systems biology might look at cellular functions such as excretion of intercellular signaling substances, and epigenetic factors that determine physical features such as size and shape of organs. One of the goals of tissue engineers is to reverse the effects of injury or aging of cartilage, nerve damage or scarring from burns and other trauma. Another major achievement would be the ability to grow entire organs using stem cells taken from the organ recipient, replacing the need for a suitable donor and eliminating the risk and waiting time required for finding said donor, or the potential complications of xenotransplantation. One breakthrough in tissue engineering announced in 2009 was the development of a biodegradable resin, by a group at University of Twente, that could be used as a scaffold in situ, for human organ generation. Another significant development, announced by scientists at Stanford and NY University School of Medicine, was the ability to grow tissues in an environment of well-vascularized cells. Using laboratory animals, they demonstrated that fatty tissue from the groin area of rats containing blood vessels, fat and skin, could be used as a scaffold for stem cells. They called the scaffolds "explanted microcirculatory beds" (EMBs). Once the cells are well embedded in the tissue they can be transplanted back into the animal, where they are not rejected. Both of these discoveries hold enormous promise for therapeutic cloning and organ transplant research. Sources: InSciences Organisation. Breakthrough in Twente: Biodegradable synthetic resin replaces vital body parts. 13 June 2009. Chang et al. 2009. Tissue engineering using autologous microcirculatory beds as vascularized bioscaffolds. FASEB Journal, March 2009. doi:10.1096/fj.08-114868. Breakthroughs in Tissue Engineering originally appeared on About.com Biotech / Biomedical on Tuesday, November 17th, 2009 at 06:22:53.
Challenges Remain for Stem Cell Therapies
There are many challenges to making stem cell therapies such as regenerative medicine actually work in a therapeutic setting. We might be able to harvest stem cells, from either blastocysts or by creating pluripotent cells from already differentiated tissues, but that's really only the beginning of a medically viable process. Once a cell line is cultured in a maintainable way, the following questions remain: Challenges Remain for Stem Cell Therapies originally appeared on About.com Biotech / Biomedical on Monday, November 16th, 2009 at 21:20:29.
Imagine H1N1 in 1850
It's the year 1847, at a hospital in Vienna. The theory of spontaneous generation is still prevalent in medical circles and story of biotechnology has not yet begun. Hungarian doctor, Ignaz Semmelweis, noting high incidence of post-partum deaths from puerpural fever (caused by Streptococcus organisms), in a wing where medical students are trained, postulates that the students were spreading diseased particles to the new mothers after having handled infected cadavers. He begins a program wherein the students wash their hands with chlorinated water before making rounds, and the death rate drops dramatically. Although Dr. Semmelweis was not quite on the mark about the cause of childbed fever, he had pinpointed a key fact that we take for granted today: Hand washing prevents the spread of germs. A key strategy for fighting H1N1 (Swine Flu) around the world today, is public education on the importance of washing our hands especially after sneezing, blowing noses or contact with other potentially infected individuals. Dr. Semmelweis was ridiculed by the medical profession and lost his job. Imagine where we would be today, in the fight against Swine Flu, if the germ theory had never caught on? If only he was around today to see how significant his observations were! The Semmelweis Society International is a website named in honor of the shamed doctor, with the intent to address bioethics issues and assist physicians and other medical professionals who are falsely accused of misconduct or subjected to biased peer review. Source: Biotech Chronicles: www.accessexcellence.org Imagine H1N1 in 1850 originally appeared on About.com Biotech / Biomedical on Thursday, November 12th, 2009 at 06:33:05.
Biotech Discoveries and the World War II Connection
It's Veteran's Day in the USA, Remembrance Day in Canada and England, and, while it may be called something different in other countries of the world, a day to remember the sacrifices of those who defend our freedom. Did you know there's a connection between World War II and one of the greatest discoveries in biotechnology? In the late 1920's Alexander Fleming made a chance discovery, that Penicillum mold, while non-toxic to humans, secreted an antibacterial substance. In 1929, his paper on the topic did not garner much interest, but during WWII, two chemists at Oxford, Howard Florey and Ernst Chain, isolated the substance, called penicillin, and discovered it kept it's antibacterial properties when dehydrated and stored as a powder. Development of this substance into a drug was expedited by the need for an antibiotic to treat soldiers injured in the war. Thus, penicillin saved the lives of many veterans, and, as the first antibiotic, is one of the most significant achievements in the history of biotechnology. Scientists would later discover restriction enzymes while investigating bacterial defenses against antibiotics. Antibiotics and restriction enzymes are two very important tools that made it possible to develop techniques for cloning and studying genes. Biotech Discoveries and the World War II Connection originally appeared on About.com Biotech / Biomedical on Wednesday, November 11th, 2009 at 08:27:11.
PCR and Synthetic Biology
When asked about the origins of synthetic biology, the most primitive, and first commercially expoited, example that comes to my mind is the construction of oligonucleotides for PCR. Oligo means short or small, and short-chains of nucleotides (DNA or RNA fragments) have become important tools in biotechnology and genetic research, ever since our ability to sequence DNA. In PCR, small pieces of DNA, usually about 15-20 base pairs long, are needed as primers. Oligonucleotides are also used for gene probing, a process for detecting certain specific sequences, and for enzyme optimization techniques like DNA shuffling and site-directed mutagenesis. We now have the ability to make much longer oligonucleotides, and technology is improving to make the process faster. According to a summary paper prepared by BIO for the 2008 World Congress, one of the most significant synthetic biotechnology breakthroughs this decade has been the in vitro construction of an entire chromosome, called PhiX174, in just 14 days. This achievement was reported in the journal PNAS by the J. Craig Venter Institute (JCVI) and team of scientists lead by Drs. Smith, Hutchinson and Venter, in 2003. PCR and Synthetic Biology originally appeared on About.com Biotech / Biomedical on Monday, November 9th, 2009 at 07:33:47.
H1N1: What are the Real Risks?
Travelling during a global pandemic is a risky business! I just got back from a trip to another province of Canada, a four hour flight away. While Ontario is handing out Swine Flu vaccine to the "priority groups" - small children, seniors and health-care workers, BC is facing a shortage and Alberta is dealing with bioethics issues arising from the public outcry over vaccination of the Calgary Flames, and a debate over whether firefighters are a high-risk group. One of the participants of a meeting I attended refused to shake anyone's hand for fear of getting sick, and last week I heard from a friend that children in her neighborhood of Toronto were not allowed to go Trick-or-Treating, because of influenza fears. During my flight home I wasn't feeling the greatest and my colleague said, a little too loud, "I hope you aren't getting sick". I quickly told her not to say that too loud and looked around for the lynch mob that might throw me off the airplane at 10,000 feet. Every year there is a percentage of people getting the flu who die from it. In the USA, approximately 36,000 people die every year from the flu, although many of those are cases complicated by additional infections such as Pneumonia and Staphylococcus. This year, the US Centers for Disease Control and Prevention (CDC) has developed a new PCR-based diagnostic kit for detection of H1N1, which will not only help diagnosis but will aid in collection of more accurate statistics. In many past cases, flu patients also had known risk factors that compromised their immune system, but many don't, including roughly half of the pediatric cases. The CDC estimates mortalities due to H1N1 at somewhere over 1000, 114 of which were children, as of the end of October. Initial reports were that this strain had actually turned out to be fairly mild, so while people weigh the risks of taking the new vaccine against risks of getting, or even dying from H1N1, confusion abounds and we are experiencing the same sort of panic that prevailed in Toronto during the SARs epidemic. H1N1: What are the Real Risks? originally appeared on About.com Biotech / Biomedical on Sunday, November 8th, 2009 at 17:10:27.
Geron Corporation's Stem Cell Trial
Geron Corporation is a company based in Menlo Park, CA and the first biotech company in the USA to be granted permission for a clinical trial of regenerative medicine using embryonic stem cells, in humans. While permission was granted in January 2009, the trials were put on hold until last Friday (October 30, 2009) when the latest round of preclinical trials using animals revealed some side effects that warranted further investigation. According to the Geron News Release, test animals receiving the treatment, GRNOPC1, developed a higher number of cysts at the area of spinal cord injury than in previous studies. However, the FDA has agreed to allow the studies to continue, since the cysts appear to be non-proliferative, confined to the injury site, and not associated with any serious adverse effects or SUSARS. GRNOPC1 consists of human embryonic stem cell (hESC)-derived oligodendrocyte progenitor cells (OPCs). Oligodendrocytes are cells of the nervous system that produce the myelin shealth, which insultates the axons of nerve cells. Injection with the cells was shown to enhance remyelination of the spinal cord in adult rats. Demyelination after spinal cord injury contributes to loss of neural function. Rats treated with GRNOPC1 seven days after injury exhibited substantially better recovery and improved locomotor ability. Geron expects re-initiation of the clinical trial in late 2010. Since the treatment must be applied shortly after injury, anyone wanting to participate in a clinical trial must agree to injections within 7 to 14 days of spinal injury. Geron's pipeline also includes an anti-cancer drug and vaccine that target the telomerase enzyme. Source: Keirstead, H. et al. 2005. Human embryonic stem cell-derived oligodendrocyte progenitor cell transplants remyelinate and restore locomotion after spinal cord injury. J. Neuroscience 25:4694-4705. doi:10.1523/jneurosci.0311-05.2005. Geron Corporation's Stem Cell Trial originally appeared on About.com Biotech / Biomedical on Monday, November 2nd, 2009 at 20:29:12.
Is a Bio-Based Economy a Fantasy?
Among those who work in biotechnology, there are three main areas of study: Biomedical, industrial, and environmental biotechnology. In just 15 years since PCR and gene cloning became a part of mainstream biotech research, industrial applications for the products of enzyme technology and GMOs have become competitive alternatives to traditional manufacturing processes, but still, few people are aware of how many everyday enzyme products have made it into their homes. Biofuels still seem to have a long way to go before widespread use and acceptance validate the claims of their proponents. While the biofuels industry has it's critics, the arguments in favour include the use of renewable feedstocks. Many pharmaceuticals today are actually semi-synthetic molecules, made in fermentation processes by living organisms and later chemically modified, if need be. The costs associated with batch production, and complications pertaining to large-scale protein purification and equipment sterilization, are among the downsides to bioprocessing. The most well-known biotech product in the home might be enzyme-based detergents, like those produced by the widely recognized Novozymes. Just about everyone is familiar with the story of stone-washed jeans and how they came to be enzymatically-altered. But jeans don't make an industry and biotech has yet to gain acceptance in many areas where the public is wary of the bioethical ramifications and potential health risks (xenotransplantation, stem cell research, nanotechnology). With so many complex issues to solve, will we ever become a fully sustainable, bio-based world? Is a Bio-Based Economy a Fantasy? originally appeared on About.com Biotech / Biomedical on Tuesday, October 27th, 2009 at 22:57:40.
Synthetic Biology and Artificial Systems
Synthetic biology has been defined as the creation of artificial life forms, but, in reality, is more often exemplified in the creation of synthetic (man-made) building blocks of lifeforms, such as ribosomes, tissues and proteins and their ligands, that can be added together to create, or enhance, a biological system (as are studied in systems biology). At University of California, Berkeley, Dr. Bertozzi and her research group study cell surface interactions and use synthetic biology to manipulate cellular processes. In doing so, they have been able to adjust the intercellular environment, control how the cells stick to one another, which affects their assembly into tissues. They reported using different types of genetically engineered cells to make artificial tissues capable of many of the functions of cell clusters, such as secreting and responding to hormones. This work is really founded on the alteration of already existing cells, not the creation of completely new ones from scratch. The novelty of the work, however, is that tissues formed from these cells are like none other and can perform as no individual cell can. In systems such as this, the community of cells acts as a whole towards an end product of the scientist's design, such as large scale drug production. Smart polymers are also examples of synthetic biology, in that they are artificial polymer-based substances that can be designed to react in a cascade-like fashion to changes in their environment, much like the inner workings of a cell. Source: Gartner, Z. and Bertozzi, C. 2009. Programmed assembly of 3-dimensional microtissues with defined cellular connectivity. PNAS 106(12):4606-4610. Synthetic Biology and Artificial Systems originally appeared on About.com Biotech / Biomedical on Monday, October 26th, 2009 at 20:20:28.
Using Systems Biology to Study Influenza
Systems biology is the study of how individual molecular components in a cell interact with each other to create active biological systems. This "grand scale" study of things generates information on the relationships between the structure and function of macromolecules (such as proteins), reaction dynamics (specific activity), and mechanisms for controlling reaction rates. These days, much of the information is built into models so that when new proteins with similar sequences are encountered, their systemic roles can be predicted. The information obtained about the immune system, or viral and bacterial systems, can be used to produce better vaccines. For example, scientists at the Institute for Systems Biology are using what they have learned about the systems of the influenza virus to determine what makes one strain more potent than another. Some of this has to do with polymorphisms of proteins on the viral outer envelope, and their tolerance for remaining functional upon mutation. For a complete lecture on this topic, the Institute has provided a 4-part video online. Using Systems Biology to Study Influenza originally appeared on About.com Biotech / Biomedical on Thursday, October 22nd, 2009 at 06:36:26.
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Breakthroughs in Tissue Engineering
A tissue is an aggregate of cells, growing and thriving in an environment where they adhere and interact with one another. Tissue Engineering is the use of bioengineering methods to create, improve, develop and grow tissues, which then may be used for grafting, cartilage repair or, ultimately, regenerative medical procedures. The study of tissues is aimed at determining the answers to fundamental questions such as how cells react and interact in a specific matrix, and may involve the use of proteomics to study gene expression and protein production in complex environments. This form of systems biology might look at cellular functions such as excretion of intercellular signaling substances, and epigenetic factors that determine physical features such as size and shape of organs. One of the goals of tissue engineers is to reverse the effects of injury or aging of cartilage, nerve damage or scarring from burns and other trauma. Another major achievement would be the ability to grow entire organs using stem cells taken from the organ recipient, replacing the need for a suitable donor and eliminating the risk and waiting time required for finding said donor, or the potential complications of xenotransplantation. One breakthrough in tissue engineering announced in 2009 was the development of a biodegradable resin, by a group at University of Twente, that could be used as a scaffold in situ, for human organ generation. Another significant development, announced by scientists at Stanford and NY University School of Medicine, was the ability to grow tissues in an environment of well-vascularized cells. Using laboratory animals, they demonstrated that fatty tissue from the groin area of rats containing blood vessels, fat and skin, could be used as a scaffold for stem cells. They called the scaffolds "explanted microcirculatory beds" (EMBs). Once the cells are well embedded in the tissue they can be transplanted back into the animal, where they are not rejected. Both of these discoveries hold enormous promise for therapeutic cloning and organ transplant research. Sources: InSciences Organisation. Breakthrough in Twente: Biodegradable synthetic resin replaces vital body parts. 13 June 2009. Chang et al. 2009. Tissue engineering using autologous microcirculatory beds as vascularized bioscaffolds. FASEB Journal, March 2009. doi:10.1096/fj.08-114868. Breakthroughs in Tissue Engineering originally appeared on About.com Biotech / Biomedical on Tuesday, November 17th, 2009 at 06:22:53.
Challenges Remain for Stem Cell Therapies
There are many challenges to making stem cell therapies such as regenerative medicine actually work in a therapeutic setting. We might be able to harvest stem cells, from either blastocysts or by creating pluripotent cells from already differentiated tissues, but that's really only the beginning of a medically viable process. Once a cell line is cultured in a maintainable way, the following questions remain: Challenges Remain for Stem Cell Therapies originally appeared on About.com Biotech / Biomedical on Monday, November 16th, 2009 at 21:20:29.
Imagine H1N1 in 1850
It's the year 1847, at a hospital in Vienna. The theory of spontaneous generation is still prevalent in medical circles and story of biotechnology has not yet begun. Hungarian doctor, Ignaz Semmelweis, noting high incidence of post-partum deaths from puerpural fever (caused by Streptococcus organisms), in a wing where medical students are trained, postulates that the students were spreading diseased particles to the new mothers after having handled infected cadavers. He begins a program wherein the students wash their hands with chlorinated water before making rounds, and the death rate drops dramatically. Although Dr. Semmelweis was not quite on the mark about the cause of childbed fever, he had pinpointed a key fact that we take for granted today: Hand washing prevents the spread of germs. A key strategy for fighting H1N1 (Swine Flu) around the world today, is public education on the importance of washing our hands especially after sneezing, blowing noses or contact with other potentially infected individuals. Dr. Semmelweis was ridiculed by the medical profession and lost his job. Imagine where we would be today, in the fight against Swine Flu, if the germ theory had never caught on? If only he was around today to see how significant his observations were! The Semmelweis Society International is a website named in honor of the shamed doctor, with the intent to address bioethics issues and assist physicians and other medical professionals who are falsely accused of misconduct or subjected to biased peer review. Source: Biotech Chronicles: www.accessexcellence.org Imagine H1N1 in 1850 originally appeared on About.com Biotech / Biomedical on Thursday, November 12th, 2009 at 06:33:05.
Biotech Discoveries and the World War II Connection
It's Veteran's Day in the USA, Remembrance Day in Canada and England, and, while it may be called something different in other countries of the world, a day to remember the sacrifices of those who defend our freedom. Did you know there's a connection between World War II and one of the greatest discoveries in biotechnology? In the late 1920's Alexander Fleming made a chance discovery, that Penicillum mold, while non-toxic to humans, secreted an antibacterial substance. In 1929, his paper on the topic did not garner much interest, but during WWII, two chemists at Oxford, Howard Florey and Ernst Chain, isolated the substance, called penicillin, and discovered it kept it's antibacterial properties when dehydrated and stored as a powder. Development of this substance into a drug was expedited by the need for an antibiotic to treat soldiers injured in the war. Thus, penicillin saved the lives of many veterans, and, as the first antibiotic, is one of the most significant achievements in the history of biotechnology. Scientists would later discover restriction enzymes while investigating bacterial defenses against antibiotics. Antibiotics and restriction enzymes are two very important tools that made it possible to develop techniques for cloning and studying genes. Biotech Discoveries and the World War II Connection originally appeared on About.com Biotech / Biomedical on Wednesday, November 11th, 2009 at 08:27:11.
PCR and Synthetic Biology
When asked about the origins of synthetic biology, the most primitive, and first commercially expoited, example that comes to my mind is the construction of oligonucleotides for PCR. Oligo means short or small, and short-chains of nucleotides (DNA or RNA fragments) have become important tools in biotechnology and genetic research, ever since our ability to sequence DNA. In PCR, small pieces of DNA, usually about 15-20 base pairs long, are needed as primers. Oligonucleotides are also used for gene probing, a process for detecting certain specific sequences, and for enzyme optimization techniques like DNA shuffling and site-directed mutagenesis. We now have the ability to make much longer oligonucleotides, and technology is improving to make the process faster. According to a summary paper prepared by BIO for the 2008 World Congress, one of the most significant synthetic biotechnology breakthroughs this decade has been the in vitro construction of an entire chromosome, called PhiX174, in just 14 days. This achievement was reported in the journal PNAS by the J. Craig Venter Institute (JCVI) and team of scientists lead by Drs. Smith, Hutchinson and Venter, in 2003. PCR and Synthetic Biology originally appeared on About.com Biotech / Biomedical on Monday, November 9th, 2009 at 07:33:47.
H1N1: What are the Real Risks?
Travelling during a global pandemic is a risky business! I just got back from a trip to another province of Canada, a four hour flight away. While Ontario is handing out Swine Flu vaccine to the "priority groups" - small children, seniors and health-care workers, BC is facing a shortage and Alberta is dealing with bioethics issues arising from the public outcry over vaccination of the Calgary Flames, and a debate over whether firefighters are a high-risk group. One of the participants of a meeting I attended refused to shake anyone's hand for fear of getting sick, and last week I heard from a friend that children in her neighborhood of Toronto were not allowed to go Trick-or-Treating, because of influenza fears. During my flight home I wasn't feeling the greatest and my colleague said, a little too loud, "I hope you aren't getting sick". I quickly told her not to say that too loud and looked around for the lynch mob that might throw me off the airplane at 10,000 feet. Every year there is a percentage of people getting the flu who die from it. In the USA, approximately 36,000 people die every year from the flu, although many of those are cases complicated by additional infections such as Pneumonia and Staphylococcus. This year, the US Centers for Disease Control and Prevention (CDC) has developed a new PCR-based diagnostic kit for detection of H1N1, which will not only help diagnosis but will aid in collection of more accurate statistics. In many past cases, flu patients also had known risk factors that compromised their immune system, but many don't, including roughly half of the pediatric cases. The CDC estimates mortalities due to H1N1 at somewhere over 1000, 114 of which were children, as of the end of October. Initial reports were that this strain had actually turned out to be fairly mild, so while people weigh the risks of taking the new vaccine against risks of getting, or even dying from H1N1, confusion abounds and we are experiencing the same sort of panic that prevailed in Toronto during the SARs epidemic. H1N1: What are the Real Risks? originally appeared on About.com Biotech / Biomedical on Sunday, November 8th, 2009 at 17:10:27.
Geron Corporation's Stem Cell Trial
Geron Corporation is a company based in Menlo Park, CA and the first biotech company in the USA to be granted permission for a clinical trial of regenerative medicine using embryonic stem cells, in humans. While permission was granted in January 2009, the trials were put on hold until last Friday (October 30, 2009) when the latest round of preclinical trials using animals revealed some side effects that warranted further investigation. According to the Geron News Release, test animals receiving the treatment, GRNOPC1, developed a higher number of cysts at the area of spinal cord injury than in previous studies. However, the FDA has agreed to allow the studies to continue, since the cysts appear to be non-proliferative, confined to the injury site, and not associated with any serious adverse effects or SUSARS. GRNOPC1 consists of human embryonic stem cell (hESC)-derived oligodendrocyte progenitor cells (OPCs). Oligodendrocytes are cells of the nervous system that produce the myelin shealth, which insultates the axons of nerve cells. Injection with the cells was shown to enhance remyelination of the spinal cord in adult rats. Demyelination after spinal cord injury contributes to loss of neural function. Rats treated with GRNOPC1 seven days after injury exhibited substantially better recovery and improved locomotor ability. Geron expects re-initiation of the clinical trial in late 2010. Since the treatment must be applied shortly after injury, anyone wanting to participate in a clinical trial must agree to injections within 7 to 14 days of spinal injury. Geron's pipeline also includes an anti-cancer drug and vaccine that target the telomerase enzyme. Source: Keirstead, H. et al. 2005. Human embryonic stem cell-derived oligodendrocyte progenitor cell transplants remyelinate and restore locomotion after spinal cord injury. J. Neuroscience 25:4694-4705. doi:10.1523/jneurosci.0311-05.2005. Geron Corporation's Stem Cell Trial originally appeared on About.com Biotech / Biomedical on Monday, November 2nd, 2009 at 20:29:12.
Is a Bio-Based Economy a Fantasy?
Among those who work in biotechnology, there are three main areas of study: Biomedical, industrial, and environmental biotechnology. In just 15 years since PCR and gene cloning became a part of mainstream biotech research, industrial applications for the products of enzyme technology and GMOs have become competitive alternatives to traditional manufacturing processes, but still, few people are aware of how many everyday enzyme products have made it into their homes. Biofuels still seem to have a long way to go before widespread use and acceptance validate the claims of their proponents. While the biofuels industry has it's critics, the arguments in favour include the use of renewable feedstocks. Many pharmaceuticals today are actually semi-synthetic molecules, made in fermentation processes by living organisms and later chemically modified, if need be. The costs associated with batch production, and complications pertaining to large-scale protein purification and equipment sterilization, are among the downsides to bioprocessing. The most well-known biotech product in the home might be enzyme-based detergents, like those produced by the widely recognized Novozymes. Just about everyone is familiar with the story of stone-washed jeans and how they came to be enzymatically-altered. But jeans don't make an industry and biotech has yet to gain acceptance in many areas where the public is wary of the bioethical ramifications and potential health risks (xenotransplantation, stem cell research, nanotechnology). With so many complex issues to solve, will we ever become a fully sustainable, bio-based world? Is a Bio-Based Economy a Fantasy? originally appeared on About.com Biotech / Biomedical on Tuesday, October 27th, 2009 at 22:57:40.
Synthetic Biology and Artificial Systems
Synthetic biology has been defined as the creation of artificial life forms, but, in reality, is more often exemplified in the creation of synthetic (man-made) building blocks of lifeforms, such as ribosomes, tissues and proteins and their ligands, that can be added together to create, or enhance, a biological system (as are studied in systems biology). At University of California, Berkeley, Dr. Bertozzi and her research group study cell surface interactions and use synthetic biology to manipulate cellular processes. In doing so, they have been able to adjust the intercellular environment, control how the cells stick to one another, which affects their assembly into tissues. They reported using different types of genetically engineered cells to make artificial tissues capable of many of the functions of cell clusters, such as secreting and responding to hormones. This work is really founded on the alteration of already existing cells, not the creation of completely new ones from scratch. The novelty of the work, however, is that tissues formed from these cells are like none other and can perform as no individual cell can. In systems such as this, the community of cells acts as a whole towards an end product of the scientist's design, such as large scale drug production. Smart polymers are also examples of synthetic biology, in that they are artificial polymer-based substances that can be designed to react in a cascade-like fashion to changes in their environment, much like the inner workings of a cell. Source: Gartner, Z. and Bertozzi, C. 2009. Programmed assembly of 3-dimensional microtissues with defined cellular connectivity. PNAS 106(12):4606-4610. Synthetic Biology and Artificial Systems originally appeared on About.com Biotech / Biomedical on Monday, October 26th, 2009 at 20:20:28.
Using Systems Biology to Study Influenza
Systems biology is the study of how individual molecular components in a cell interact with each other to create active biological systems. This "grand scale" study of things generates information on the relationships between the structure and function of macromolecules (such as proteins), reaction dynamics (specific activity), and mechanisms for controlling reaction rates. These days, much of the information is built into models so that when new proteins with similar sequences are encountered, their systemic roles can be predicted. The information obtained about the immune system, or viral and bacterial systems, can be used to produce better vaccines. For example, scientists at the Institute for Systems Biology are using what they have learned about the systems of the influenza virus to determine what makes one strain more potent than another. Some of this has to do with polymorphisms of proteins on the viral outer envelope, and their tolerance for remaining functional upon mutation. For a complete lecture on this topic, the Institute has provided a 4-part video online. Using Systems Biology to Study Influenza originally appeared on About.com Biotech / Biomedical on Thursday, October 22nd, 2009 at 06:36:26.
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